getConsensusGenes: Create a consensus gene list from a set of expression...

Description Usage Arguments Value

View source: R/prepInput.R

Description

This consensus gene list can then be used for reordering and ranking a dataset.

Usage

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getConsensusGenes(list.dats, min.fraction = 0.6, min.genes = 8000,
  na.max = 0.3)

Arguments

min.fraction

the fraction number of studies that we allow, defaults to 0.6

min.genes

the minimum number of genes that the studies need to contain to be considered (if you use the package GPL mapping, it will already filter to a minimum threshold, but use this to adjust further)

na.max

maximum NA fraction to keep a row, defaults to 0.3

list.exprs

the list of dataset objects from prepFromGSE or prepFromExpr

Value

list of genes present in min.fraction of the studies


erflynn/exprsex documentation built on Feb. 23, 2020, 2:34 a.m.