Description Usage Arguments Value
This consensus gene list can then be used for reordering and ranking a dataset.
1 2 | getConsensusGenes(list.dats, min.fraction = 0.6, min.genes = 8000,
na.max = 0.3)
|
min.fraction |
the fraction number of studies that we allow, defaults to 0.6 |
min.genes |
the minimum number of genes that the studies need to contain to be considered (if you use the package GPL mapping, it will already filter to a minimum threshold, but use this to adjust further) |
na.max |
maximum NA fraction to keep a row, defaults to 0.3 |
list.exprs |
the list of dataset objects from prepFromGSE or prepFromExpr |
list of genes present in min.fraction of the studies
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