getConsensusGenes: Create a consensus gene list from a set of expression...

In erflynn/exprsex: Rank-Based Sex Labeling of Microarray Expression Data

Description

This consensus gene list can then be used for reordering and ranking a dataset.

Usage

getConsensusGenes(list.dats, min.fraction = 0.6, min.genes = 8000,
  na.max = 0.3)

Arguments

min.fraction	the fraction number of studies that we allow, defaults to 0.6
min.genes	the minimum number of genes that the studies need to contain to be considered (if you use the package GPL mapping, it will already filter to a minimum threshold, but use this to adjust further)
na.max	maximum NA fraction to keep a row, defaults to 0.3
list.exprs	the list of dataset objects from prepFromGSE or prepFromExpr

Value

list of genes present in min.fraction of the studies

erflynn/exprsex documentation built on Feb. 23, 2020, 2:34 a.m.