parse_entrez_from_gpl: Parse and map entrez data from a GPL annotation.

In erflynn/exprsex: Rank-Based Sex Labeling of Microarray Expression Data

Description

Parse and map entrez data from a GPL annotation.

Usage

parse_entrez_from_gpl(gpl.name, ref_dir = NULL, MIN.OVERLAP = 8000,
  verbose = TRUE)

Arguments

gpl.name	the name gpl to load
ref_dir	optional reference directory, defaults to a temporary directory
MIN.OVERLAP	the minimum number of mapped genes allowed, default is 8000
verbose	print addition logging data if it fails, defaults to TRUE

Value

a data frame with "probe" and "gene" columns, where gene is the entrezid

erflynn/exprsex documentation built on Feb. 23, 2020, 2:34 a.m.