getPrepGSE: Get and prepare a gse file for sex labeling by converting it...

In erflynn/exprsex: Rank-Based Sex Labeling of Microarray Expression Data

Description

Get and prepare a gse file for sex labeling by converting it to genes. Optionally this will also reorder by a list of genes and convert it to ranks.

Usage

getPrepGSE(gse, gse.dir = NULL, gpl.dir = NULL, out.dir = NULL)

Arguments

gse	the ID of the GSE to download
gse.dir	directory that contains gse files, if empty, will download the GSE
gpl.dir	directory where GPL ref data is location, empty defaults to tempdir()
out.dir	directory to write output, if empty will just be returned and not be written out

Value

list of gene expression matrices, with rows as genes and columns as samples values are gene expression levels

erflynn/exprsex documentation built on Feb. 23, 2020, 2:34 a.m.