dot-geomMeanScore: Calculate the score geometric mean of male genes - female...
In erflynn/exprsex: Rank-Based Sex Labeling of Microarray Expression Data
Description
Usage
Arguments
Value
Description
Relies on the psych package to calculate geometric means for each set of genes.
The end result is a score for the difference in means which is used for classification.
Usage
1
.geomMeanScore(expr_mat, female_genes, male_genes)
Arguments
expr_mat
expression dataset: rows are genes, columns are samples
female_genes
list of genes with female-specific expression
male_genes
list of genes with male-specific expression
Value
a list of geometric mean scores for males ("m") and females ("f")
erflynn/exprsex documentation built on Feb. 23, 2020, 2:34 a.m.
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Description Usage Arguments Value
Description
Relies on the psych package to calculate geometric means for each set of genes. The end result is a score for the difference in means which is used for classification.
Usage
1 | .geomMeanScore(expr_mat, female_genes, male_genes)
|
Arguments
expr_mat |
expression dataset: rows are genes, columns are samples |
female_genes |
list of genes with female-specific expression |
male_genes |
list of genes with male-specific expression |
Value
a list of geometric mean scores for males ("m") and females ("f")
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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