predSexLab: Use a particular sex labeling fit to label an input dataset

In erflynn/exprsex: Rank-Based Sex Labeling of Microarray Expression Data

Description

Use a particular sex labeling fit to label an input dataset

Usage

predSexLab(fit, expr_mat, numeric_lab = TRUE, scores = FALSE,
  ret_expr = FALSE)

Arguments

fit	a sex labeling fit object
expr_mat	data frame to label - rows are genes, columns are samples, values are ranks
numeric_lab	if FALSE, the output is "female/male", otherwise it is numeric (0/1)
scores	whether to return the scores, defaults to FALSE
ret_expr	whether to return the expression values, defaults to FALSE

Value

sex_lab - a list of sex labels (0/1 or "female"/"male") if 'scores' is specified, the result is a data.frame with columns for the f, m scores and the sex label if 'ret_expr' is specified, a list is returned, "sl" are the sex labels (as list or df), "f_mat" and "m_mat" contain the expression or ranks of the genes that go into the score

erflynn/exprsex documentation built on Feb. 23, 2020, 2:34 a.m.