API for eriqande/CKMRsim
Inference of Pairwise Relationships Using Likelihood Ratios
| Global functions | |
|---|---|
| %>% | Man page |
| CKMRsim | Man page |
| CKMRsim-package | Man page |
| Qij_class | Man page Source code |
| afreq_str | Man page Source code |
| brook_trout_genos | Man page |
| ckmr2colony | Man page Source code |
| ckmr_class | Man page Source code |
| ckmr_relats | Man page Source code |
| colony_template | Source code |
| combine_miscalls_and_dropouts | Man page Source code |
| comp_ind_pairwise | Man page Source code |
| create_ckmr | Man page Source code |
| create_integer_genotype_matrix | Man page Source code |
| example_L_biallelic | Man page |
| example_L_microhap | Man page |
| example_L_microsat | Man page |
| extract_logls | Man page Source code |
| find_close_matching_genotypes | Man page Source code |
| flatten_ckmr | Man page Source code |
| format.Qij | Man page Source code |
| format.ckmr | Man page Source code |
| format_mixed_r | Source code |
| ge_model_TGIE | Man page Source code |
| ge_model_microhap1 | Man page Source code |
| ge_model_microsat1 | Man page Source code |
| general_allele_based_geno_err_model | Man page Source code |
| geometric_chromo_lengths | Man page Source code |
| hap_obs_prob | Man page Source code |
| hello | Source code |
| id_prepend | Man page Source code |
| imp_samp | Source code |
| index_ab | Man page Source code |
| insert_C_l_matrices | Man page Source code |
| insert_Y_l_matrices | Man page Source code |
| install_mendel | Man page Source code |
| kappas | Man page |
| labrador_salar_ngs_msats | Man page |
| linked_mhaps | Man page |
| locus_specific_pairwise | Man page Source code |
| loggy_reweight | Man page Source code |
| long_markers | Man page |
| long_markers_to_X_l_list | Man page Source code |
| make_matrix_X_l | Man page Source code |
| markers2mendel_def_lines | Man page Source code |
| markers2mendel_map_lines | Man page Source code |
| markers40 | Man page |
| markers_on_map | Man page |
| mc_sample_simple | Man page Source code |
| mendelBin | Man page Source code |
| mendel_control_list | Man page Source code |
| microhaplotype_geno_err_matrix | Man page Source code |
| microhaps | Man page |
| pairwise_geno_id | Man page Source code |
| pairwise_kin_logl_ratios | Man page Source code |
| pedigree2mendel_ped_file | Man page Source code |
| pedigrees | Man page |
| print.Qij | Man page Source code |
| print.ckmr | Man page Source code |
| read_mendel_outped | Man page Source code |
| reindex_markers | Man page Source code |
| run_mendel | Man page Source code |
| samp_from_mat | Man page Source code |
| sample_linked_genotype_pairs | Man page Source code |
| sebastes | Man page |
| simulate_Qij | Man page Source code |
| simulate_and_calc_Q | Man page Source code |
| simulate_missing_data_array | Man page Source code |
| sprinkle_markers_into_genome | Man page Source code |
| tag_mendelian_incompatibilities | Man page Source code |
| top_index | Man page Source code |
| vanilla | Source code |
| write_all_mendel_files | Man page Source code |
