View source: R/fct_analysis_random.R
find_overlap_gmt | R Documentation |
For a species not in the iDEP database, calculate the overlap for pathway analysis.
find_overlap_gmt(
query,
gene_set,
min_fdr = 0.2,
min_size = 2,
max_size = 10000,
use_filtered_background,
min_genes_background,
max_genes_background,
idep_data,
processed_data
)
query |
Vector of genes to calculate the overlap on |
gene_set |
Gene sets from the custom GMT file to use in the overlap |
min_fdr |
Significant p-value to determine significantly expressed genes |
min_size |
Minimum size for a pathway gene set |
max_size |
Maximum size for a pathway gene set. |
A dataframe
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