NMFDoubletsPlotModulesInCell: Plot cells' expression of modules

In farrellja/URD: URD

Description

For inspecting why particular cells do or don't get called as doublets. Makes a dot plot to represent NMF module expression within a particular group of cells. Expression level is represented by color and whether the cell passes the threshold for expression of that module is represented by shape.

Usage

NMFDoubletsPlotModulesInCell(
  object,
  modules,
  cells,
  module.expressed.thresh = Inf
)

Arguments

object	An URD object
modules	(Character vector) Modules to plot (Column names of @nmf.c1)
cells	(Character vector) Cells to plot on y-axis
module.expressed.thresh	(Numeric) Threshold for module expression. Will change the shape of points to emphasize whether they made cut-offs.

Value

A ggplot2 object

farrellja/URD documentation built on June 17, 2020, 4:48 a.m.