URD: URD - Reconstruction of Branching Developmental Trajectories

Description Creating an URD object Basic data analysis Calculate diffusion map Calculate pseudotime Find developmental trajectories Build developmental tree Plot with abandon

Description

URD reconstructs transcriptional trajectories underlying specification or differentiation processes in the form of a branching tree from single-cell RNAseq data. The URD object class is documented under URDclass. There are many functions in the package, but a starting guide to help you get started is:

Creating an URD object

Basic data analysis

Calculate diffusion map

Calculate pseudotime

Find developmental trajectories

Build developmental tree

Plot with abandon


farrellja/URD documentation built on June 17, 2020, 4:48 a.m.