geneCascadeImpulsePlots: Plot Impulse Fits For a Gene Cascade

In farrellja/URD: URD

Description

This plots the results of fitting gene expression data with impulse models. (i.e. from geneCascadeProcess.) The windowed data is plotted as black points for each gene, and the fit curve is plotted. Its color indicates the type of fit that was chosen: blue (linear), green (single sigmoid), red (double sigmoid). Diamonds indicate determined gene onset (orange) and gene offset (blue) times.

Usage

geneCascadeImpulsePlots(cascade, genes = NULL, ymin0 = T, file = NULL)

Arguments

cascade	(List) A gene cascade, such as generated by geneCascadeProcess
genes	(Character vector) Genes to plot (default NULL plots all genes that were fit by geneCascadeProcess)
ymin0	(Logical) Should the minimum value of the y-axis be 0 (TRUE) or the minimum value of the fit data (FALSE)
file	(Path) A path to save the plot to as PDF (if NULL, display)

farrellja/URD documentation built on June 17, 2020, 4:48 a.m.