plotDists: Plot distributions

In farrellja/URD: URD

Description

This will plot the distribution of a continuous label across discrete classes. For instance, it can be used to plot the distribution of pseudotime in each developmental stage.

Usage

plotDists(
  object,
  label,
  category.label,
  label.type = "search",
  category.label.type = "search",
  legend = T,
  plot.title = ""
)

Arguments

object	An URD object
label	(Character) Data to use for distributions (e.g. "pseudotime", a metadata name, or a gene name). Must be continuous.
category.label	(Character) Data to use for dividing into separate curves (e.g. developmental stage or a clustering). Must be discrete.
label.type	(Character) Type of data to search for the label. Default is "search" which checks several data types in order. For more information: data.for.plot
category.label.type	(Character) Type of data to search for category.label. Default is "search" which checks several data types in order. For more information: data.for.plot
legend	(Logical) Show a legend?
plot.title	(Character) Title of the plot

Value

A ggplot2 object. If used in a loop, plot(plotDists(...)) must be used.

farrellja/URD documentation built on June 17, 2020, 4:48 a.m.