plotViolin: Violin plot of gene expression

In farrellja/URD: URD

Description

Violin plot of gene expression

Usage

plotViolin(
  object,
  labels.plot,
  clustering,
  clusters.use = NULL,
  legend = T,
  free.axes = F,
  point.size = 0.2,
  point.color = "black",
  point.alpha = 0.5
)

Arguments

object	An URD object
labels.plot	(Character vector) Data to use for coloring points (e.g. a metadata name, group ID from clustering, or a gene name)
clustering	(Character) Name of clustering to use (i.e. a column name of @group.ids)
clusters.use	(Character vector) Names of clusters to display (default NULL uses all clusters)
legend	(Logical) Display a legend?
free.axes	(Logical) Should the scale of each label be individually determined?

Value

A ggplot2 object

farrellja/URD documentation built on June 17, 2020, 4:48 a.m.