pseudotimePlotStabilityOverall: Plot Pseudotime Stability
In farrellja/URD: URD
Description
Usage
Arguments
Details
Value
Examples
View source: R/pseudotime-stability-plots.R
Description
This plots the overall change in pseudotimes (across all cells), as the number
of simulations is increased. This plot should become asymptotic if enough
simulations have been run. The number of data points shown is determined by
the stability.div parameter when processing floods or walks.
Usage
1
pseudotimePlotStabilityOverall(object)
Arguments
object
An URD object
Details
This relies on the data stored in @pseudotime.stability, which is
written by both floodPseudotimeProcess and
processRandomWalksFromTips. Each call to either function overwrites
this slot, so it will display plots from the most recent time either function
has been called.
Value
A ggplot2 object
Examples
1
pseudotimePlotStabilityOverall(object)
farrellja/URD documentation built on June 17, 2020, 4:48 a.m.
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Description Usage Arguments Details Value Examples
View source: R/pseudotime-stability-plots.R
Description
This plots the overall change in pseudotimes (across all cells), as the number
of simulations is increased. This plot should become asymptotic if enough
simulations have been run. The number of data points shown is determined by
the stability.div parameter when processing floods or walks.
Usage
1 | pseudotimePlotStabilityOverall(object)
|
Arguments
object |
An URD object |
Details
This relies on the data stored in @pseudotime.stability, which is
written by both floodPseudotimeProcess and
processRandomWalksFromTips. Each call to either function overwrites
this slot, so it will display plots from the most recent time either function
has been called.
Value
A ggplot2 object
Examples
1 | pseudotimePlotStabilityOverall(object)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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