txReadsPerCell: Read 10X Reads per Cell barcode
In farrellja/URD: URD
Description
Usage
Arguments
Value
Description
This reads and aggregates the molecule info file output by the 10X pathway
into reads per cell barcode for use in txCutoffPlot. (This is
because it takes some time to read in this data, so many plots can be tried
with only having to read the data once.)
Usage
1
txReadsPerCell(molecule.info.path)
Arguments
molecule.info.path
(Character) Path to the molecule_info.h5 file output by 10X.
Value
Returns a data.frame with columns "barcode" (2-bit encoded cell barcode),
"reads", "unmapped_reads", and "nonconf_mapped_reads" (as per 10X documentation),
and "total_reads", which is the sum of the 3 previous columns.
farrellja/URD documentation built on June 17, 2020, 4:48 a.m.
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Description Usage Arguments Value
Description
This reads and aggregates the molecule info file output by the 10X pathway
into reads per cell barcode for use in txCutoffPlot. (This is
because it takes some time to read in this data, so many plots can be tried
with only having to read the data once.)
Usage
1 | txReadsPerCell(molecule.info.path)
|
Arguments
molecule.info.path |
(Character) Path to the molecule_info.h5 file output by 10X. |
Value
Returns a data.frame with columns "barcode" (2-bit encoded cell barcode), "reads", "unmapped_reads", and "nonconf_mapped_reads" (as per 10X documentation), and "total_reads", which is the sum of the 3 previous columns.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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