CL.subset: COSMIC identifiers of 15 immortalised human cancer cell lines

In francescojm/CRISPRcleanR: Unsupervised correction of gene independent cell responses to CRISPR-cas9 targeting

COSMIC identifiers of 15 immortalised human cancer cell lines

Description

COSMIC identifiers [1] of 15 cell lines included in the GDSC1000 panel [2] that are used in [3] to assess CRISPRcleaneR results.

Usage

data(CL.subset)

Format

A vector of strings.

References

[1] Forbes SA, Beare D, Boutselakis H, et al. COSMIC: somatic cancer genetics at high-resolution Nucleic Acids Research, Volume 45, Issue D1, 4 January 2017, Pages D777-D783,

[2] Iorio F, Knijnenburg TA, Vis DJ, Bignell GR, Menden MP, et al. A landscape of pharmacogenomic interactions in cancer Cell 2016 Jul 28;166(3):740-54

[3] Iorio, F., Behan, F. M., Goncalves, E., Beaver, C., Ansari, R., Pooley, R., et al. (n.d.). Unsupervised correction of gene-independent cell responses to CRISPR-Cas9 targeting.
http://doi.org/10.1101/228189

Examples

data(CL.subset)

## Loading annotation for the GDSC1000 cell lines
data(GDSC.CL_annotation)

## Visualising annotation
GDSC.CL_annotation[CL.subset,]

francescojm/CRISPRcleanR documentation built on April 30, 2023, 5:41 a.m.