GDSC.CL_annotation: Tissue type and other annotations for 1,001 human cancer cell...

In francescojm/CRISPRcleanR: Unsupervised correction of gene independent cell responses to CRISPR-cas9 targeting

Tissue type and other annotations for 1,001 human cancer cell lines

Description

Tissue type and other annotations for 1,001 human cancer cell lines

Usage

data(GDSC.CL_annotation)

Format

A data frame with 1,001 observations of the following 7 variables.

CL.name

Cell line name;

COSMIC.ID

Cosmic identifier of the cell line;

GDSC.description_1

Tissue descriptor (Genomics of Drug Sensitivity in Cancer - Level 1);

GDSC_description_2

Tissue descriptor (Genomics of Drug Sensitivity in Cancer - Level 2);

‘⁠TCGA type⁠’

Manaually curated matched TCGA cancer type;

MMR

Microsatellite instability status (MSI-S = Stable, MSI-L = Instable, MSI-H = highly-Instable).

Source

This data frame has been derived from the xls table available at https://www.cancerrxgene.org/gdsc1000/GDSC1000_WebResources//Data/suppData/TableS1E.xlsx.

References

[1] Iorio F, Knijnenburg TA, Vis DJ, Bignell GR, Menden MP, et al. A landscape of pharmacogenomic interactions in cancer Cell 2016 Jul 28;166(3):740-54

Examples

data(GDSC.CL_annotation)
head(GDSC.CL_annotation)

francescojm/CRISPRcleanR documentation built on April 30, 2023, 5:41 a.m.