API for funnell/reactomefi
Reactome FI network analysis tools

Global functions
HotNet Man page Source code
HotNet-class Man page
ReactomeFINetwork Man page Source code
ReactomeFINetwork-class Man page
ReactomeFIService Man page Source code
ReactomeFIService-class Man page
annotate Man page
annotate,ReactomeFINetwork,character-method Man page
annotateModules Man page
annotateModules,ReactomeFINetwork-method Man page
build Man page
build,ReactomeFINetwork,character-method Man page
buildCytoscapeGraph Man page
buildCytoscapeGraph,ReactomeFINetwork-method Man page
cluster Man page
cluster,ReactomeFINetwork-method Man page
df2tsv Man page Source code
extractAnnotations Source code
extractFIs Man page Source code
extractProteinInfo Man page Source code
fis Man page
fis,ReactomeFINetwork-method Man page
fis2str Man page Source code
fis<- Man page
fis<-,ReactomeFINetwork,data.frame-method Man page
genes Man page
genes,ReactomeFINetwork-method Man page
genes<- Man page
genes<-,ReactomeFINetwork,character-method Man page
getPostXML Man page Source code
ggplot.net Man page Source code
glioblastoma.maf Man page
layout.net Man page Source code
maf2genescores Man page Source code
modules Man page
modules,HotNet-method Man page
modules,ReactomeFINetwork-method Man page
modules<- Man page
modules<-,ReactomeFINetwork,data.frame-method Man page
plot,ReactomeFINetwork,missing-method Man page
queryAnnotateGeneSet Man page
queryAnnotateGeneSet,ReactomeFIService,character,character-metho Man page
queryAnnotateModules Man page
queryAnnotateModules,ReactomeFIService,data.frame,character-meth Man page
queryBuildNetwork Man page
queryBuildNetwork,ReactomeFIService,character-method Man page
queryCluster Man page
queryCluster,ReactomeFIService,data.frame-method Man page
queryEdge Man page
queryEdge,ReactomeFIService,character,character-method Man page
queryFIs Man page
queryFIs,ReactomeFIService,character-method Man page
queryFIsBetween Man page
queryFIsBetween,ReactomeFIService,data.frame-method Man page
queryHotNetAnalysis Man page
queryHotNetAnalysis,ReactomeFIService-method Man page
reactomefi Man page
reactomefi-package Man page
service Man page
service,HotNet-method Man page
service,ReactomeFINetwork-method Man page
serviceURL Man page
serviceURL,ReactomeFIService-method Man page
subnet Man page
subnet,HotNet-method Man page
version Man page
version,ReactomeFINetwork-method Man page
version,ReactomeFIService-method Man page
funnell/reactomefi documentation built on May 14, 2017, 4:35 a.m.