Description Usage Arguments Value
Query the RESTful API to annotate a gene set from a FI network module with enriched pathways, or GO terms
1 2 3 4 5 6 | queryAnnotateModules(object, module.nodes, type = c("Pathway", "BP", "CC",
"MF"))
## S4 method for signature 'ReactomeFIService,data.frame,character'
queryAnnotateModules(object,
module.nodes, type = c("Pathway", "BP", "CC", "MF"))
|
object |
ReactomeFIService object. |
module.nodes |
Data frame with network nodes (genes) and their module. |
type |
Gene annotation enrichment type (Pathway, BP, CC, MF). |
data.frame Each row represents an annotation of the provided type and includes related information such as the p-value and FDR generated from enrichment analysis and the module the annotation belongs to.
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