ReactomeFINetwork: ReactomeFINetwork Class

In funnell/reactomefi: Reactome FI network analysis tools

Description

Represents a functional interaction network generated using the Reactome database and a given list of genes.

ReactomeFINetwork constructor

Usage

ReactomeFINetwork(version = c("2009", "2012", "2013"), genes = character(),
  use.linkers = FALSE, cluster = FALSE)

Arguments

version	Version of ReactomeFI network (2009, 2012, 2013).
genes	Character vector of gene names.
use.linkers	Set to TRUE to build a network using linker genes (default: FALSE).
cluster	Set to TRUE to cluster the network if gene names have been provided (default FALSE).

Value

ReactomeFINetwork ReactomeFINetwork S4 object.

funnell/reactomefi documentation built on May 16, 2019, 4:05 p.m.