ggplot.net: ggplot Network Plot network edges and vertices using ggplot

In funnell/reactomefi: Reactome FI network analysis tools

Description

ggplot Network Plot network edges and vertices using ggplot

Usage

ggplot.net(vertex.coords, edge.coords, colour.modules, node.alpha, edge.alpha,
  indicate.linkers)

Arguments

vertex.coords	DataFrame containing vertex x,y coordinates, gene names, and optionally module labels.
edge.coords	DataFrame containing edge line end coordinates
colour.modules	Set to TRUE to colour nodes according to their module
node.alpha	Value between 0 and 1 indicating nodes' transparency
edge.alpha	Value between 0 and 1 indicating the edges' transparency
indicate.linkers	Set to TRUE to visualise linker nodes as a diamond

Value

ggplot ggplot object

funnell/reactomefi documentation built on May 16, 2019, 4:05 p.m.