queryHotNetAnalysis-methods: Query HotNet Analysis

In funnell/reactomefi: Reactome FI network analysis tools

Description

Query the RESTful API to do HotNet analysis. The ReactomeFI API implements the "HotNet" algorithm for doing cancer mutation analysis developed by Raphael's group at Brown University.

Usage

queryHotNetAnalysis(object, gene.scores, delta, fdr, permutations, auto.delta)

## S4 method for signature 'ReactomeFIService'
queryHotNetAnalysis(object, gene.scores, delta,
  fdr, permutations, auto.delta)

Arguments

object	ReactomeFIService object.
gene.scores	Data frame containing gene, score pairs.
delta	Numeric delta value.
fdr	FDR cutoff.
permutations	Number of permutations.
auto.delta	Set to TRUE to automatically select a delta value.

Value

data.frame

funnell/reactomefi documentation built on May 16, 2019, 4:05 p.m.