queryAnnotateGeneSet-methods: Query Annotate Gene Set

In funnell/reactomefi: Reactome FI network analysis tools

Description

Query the RESTful API to annotate a gene set with enriched pathways, or GO terms

Usage

queryAnnotateGeneSet(object, genes, type = c("Pathway", "BP", "CC", "MF"))

## S4 method for signature 'ReactomeFIService,character,character'
queryAnnotateGeneSet(object,
  genes, type = c("Pathway", "BP", "CC", "MF"))

Arguments

object	ReactomeFIService object.
genes	Character vector of gene names.
type	Gene annotation enrichment type (Pathway, BP, CC, MF).

Value

data.frame Each row represents an annotation of the provided type and includes related information such as the p-value and FDR generated from enrichment analysis.

funnell/reactomefi documentation built on May 16, 2019, 4:05 p.m.