Man pages for funnell/reactomefi
Reactome FI network analysis tools
| annotate-methods | Annotate Network |
| annotateModules-methods | Annotate Network Modules |
| buildCytoscapeGraph-methods | Build Cytoscape Graph |
| build-methods | Build Network |
| cluster-methods | Cluster Network |
| df2tsv | Data Frame to TSV Convert a data frame (not including... |
| extractFIs | Extract FIs From XML Document Extract FI gene pairs from an... |
| extractProteinInfo | extract Protein Info Extract protein information including... |
| fis2str | FIs to String Convert a FI data frame into a string according... |
| fis-methods | Retrieve FI Network Data |
| genes-methods | Retrieve Network Genes |
| getPostXML | Get POST Query XML Response Make a POST request to a URL with... |
| ggplot.net | ggplot Network Plot network edges and vertices using ggplot |
| glioblastoma.maf | Glioblastoma MAF |
| HotNet | HotNet Class |
| layout.net | Layout ReactomeFINetwork Retrieve the coordinates for the... |
| maf2genescores | NCI MAF to genescore |
| modules-methods | Retrieve Network Module Data |
| plot-methods | Plot Network Plot the interaction network. Layout methods are... |
| queryAnnotateGeneSet-methods | Query Annotate Gene Set |
| queryAnnotateModules-methods | Query Annotate FI Network Module Gene Set |
| queryBuildNetwork-methods | Query Build Network |
| queryCluster-methods | Query Cluster Functional Interaction Network |
| queryEdge-methods | Query Edge |
| queryFIsBetween-methods | Query FIs Between Genes |
| queryFIs-methods | Query Functional Interactions |
| queryHotNetAnalysis-methods | Query HotNet Analysis |
| reactomefi | reactomefi. |
| ReactomeFINetwork | ReactomeFINetwork Class |
| ReactomeFIService | ReactomeFIService Class |
| service-methods | Retrieve ReactomeFIService Object |
| serviceURL-methods | RESTful API URL |
| subnet-methods | Create HotNet ReactomeFI Network |
| version-methods | Reactome FI Network Version |
