Files in genomaths/GenomAutomorphism

Compute the automorphisms between DNA's Abelian group representations

NEWS.md R/GenomAutomorphism.R R/aa_phychem_index.R R/allClasses.R R/aminoacid_dist.R R/as.AutomorphismList.R R/aut3D.R R/autZ125.R R/autZ5.R R/autZ64.R R/automorphismByRanges.R R/automorphism_bycoef.R R/automorphisms.R R/base2codon.R R/base2int.R R/base_methods.R R/codon_coord.R R/codon_dist.R R/codon_dist_matrix.R R/codon_matrix.R R/conserved_regions.R R/data_aaindex1.R R/data_aaindex2.R R/data_aaindex3.R R/data_aln.R R/data_autby_coef.R R/data_autm.R R/data_autm_3d.R R/data_autm_z125.R R/data_brca1_aln.R R/data_brca1_aln2.R R/data_brca1_autm.R R/data_brca1_autm2.R R/data_cdm_z64.R R/data_covid_aln.R R/data_covid_autm.R R/data_cyc_aln.R R/data_cyc_autm.R R/data_dna_phyche.R R/dna_phychem.R R/extract-methods.R R/getAutomorphisms.R R/get_coord.R R/get_mutscore.R R/matrices.R R/mod.R R/modeq.R R/modlineq.R R/mut_type.R R/peptide_phychem_index.R R/reexport.R R/seqranges.R R/show-methods.R R/slapply.R R/sortByChromAndStart.R R/str2chr.R R/str2dig.R R/translation.R README.md inst/scripts/datasets_script.R man/Automorphism.Rd man/AutomorphismByCoef.Rd man/AutomorphismByCoefList.Rd man/AutomorphismList.Rd man/BaseGroup.Rd man/BaseGroup_OR_CodonGroup.Rd man/BaseSeq.Rd man/BaseSeqMatrix.Rd man/CodonGroup.Rd man/CodonMatrix.Rd man/CodonSeq.Rd man/ConservedRegion.Rd man/GRangesMatrixSeq.Rd man/GRanges_OR_NULL.Rd man/GenomAutomorphism.Rd man/ListCodonMatrix.Rd man/MatrixList.Rd man/MatrixSeq.Rd man/aa_phychem_index.Rd man/aaindex1.Rd man/aaindex2.Rd man/aaindex3.Rd man/aln.Rd man/aminoacid_dist.Rd man/as.AutomorphismList.Rd man/aut3D.Rd man/autZ125.Rd man/autZ5.Rd man/autZ64.Rd man/autby_coef.Rd man/autm.Rd man/autm_3d.Rd man/autm_z125.Rd man/automorphismByRanges.Rd man/automorphism_bycoef.Rd man/automorphisms.Rd man/base2codon.Rd man/base2int.Rd man/base_methods.Rd man/base_repl.Rd man/brca1_aln.Rd man/brca1_aln2.Rd man/brca1_autm.Rd man/brca1_autm2.Rd man/cdm_z64.Rd man/codon_coord.Rd man/codon_dist.Rd man/codon_dist_matrix.Rd man/codon_matrix.Rd man/conserved_regions.Rd man/covid_aln.Rd man/covid_autm.Rd man/cyc_aln.Rd man/cyc_autm.Rd man/dna_phyche.Rd man/dna_phychem.Rd man/extract-methods.Rd man/getAutomorphisms.Rd man/get_coord.Rd man/get_mutscore.Rd man/is.url.Rd man/matrices.Rd man/mod.Rd man/modeq.Rd man/modlineq.Rd man/mut_type.Rd man/peptide_phychem_index.Rd man/reexports.Rd man/seqranges.Rd man/show-methods.Rd man/slapply.Rd man/sortByChromAndStart.Rd man/str2chr.Rd man/str2dig.Rd man/translation.Rd man/valid.Automorphism.Rd man/valid.AutomorphismByCoef.Rd man/valid.AutomorphismByCoefList.Rd man/valid.AutomorphismList.Rd man/valid.BaseGroup.Rd man/valid.CodonGroup.Rd man/valid.MatrixList.Rd tests/spelling.R tests/testthat.R tests/testthat/test-AutomorphismList-methods.R tests/testthat/test-aa_mutmat.R tests/testthat/test-aa_phychem_index.R tests/testthat/test-aminoacid_dist.R tests/testthat/test-as.AutomorphismList.R tests/testthat/test-aut3D.R tests/testthat/test-autZ125.R tests/testthat/test-autZ5.R tests/testthat/test-autZ64.R tests/testthat/test-automorphismByRanges.R tests/testthat/test-automorphism_bycoef.R tests/testthat/test-automorphisms.R tests/testthat/test-base2codon.R tests/testthat/test-base2int.R tests/testthat/test-base_coord.R tests/testthat/test-codon_dist.R tests/testthat/test-codon_dist_matrix.R tests/testthat/test-conserved_regions.R tests/testthat/test-extract-methods.R tests/testthat/test-getAutomorphisms.R tests/testthat/test-get_coord.R tests/testthat/test-get_mutscore.R tests/testthat/test-matrices.R tests/testthat/test-mod.R tests/testthat/test-modeq.R tests/testthat/test-modlineq.R tests/testthat/test-mut_type.R tests/testthat/test-peptide_phychem_index.R tests/testthat/test-seqranges.R tests/testthat/test-slapply.R tests/testthat/test-str2chr.R tests/testthat/test-str2dig.R tests/testthat/test-translation.R vignettes/GenomAutomorphism.Rmd