| .AICquasiPoisson |
Man page
|
| .betaBinPosteriors |
Man page
|
| .estimateGLM |
Man page
|
| .evaluateModel |
Man page
|
| .getBaseMeansAndVariances |
Man page
|
| .gmMean |
Man page
|
| .gunzip |
Man page
|
| AICmodel |
Man page
|
| BICmodel |
Man page
|
| Extract |
Man page
|
| FisherTest |
Man page
|
| GeneUpDownStream |
Man page
|
| HD |
Man page
|
| MethylIT |
Man page
|
| PS |
Man page
|
| [.InfDiv |
Man page
|
| [.RangedGlmDataSet |
Man page
|
| [.glmDataSet |
Man page
|
| [.pDMP |
Man page
|
| beta_bin_meth |
Man page
|
| beta_bin_meth,GRanges-method |
Man page
|
| beta_bin_meth,GRangesList-method |
Man page
|
| beta_bin_meth,matrix_OR_data.frame-method |
Man page
|
| boltzman_factor |
Man page
|
| boltzman_factor,ProbDistrList-method |
Man page
|
| boltzman_factor,cdfMODEL-method |
Man page
|
| boltzman_factor,cdfMODELlist-method |
Man page
|
| boltzman_factor,missingORNULL-method |
Man page
|
| coef |
Man page
|
| coef.ProbDistrList |
Man page
|
| coef.cdfMODEL |
Man page
|
| coef.cdfMODELlist |
Man page
|
| countTest2 |
Man page
|
| cutpoint |
Man page
|
| dggamma |
Man page
|
| dmpClusters |
Man page
|
| dmps |
Man page
|
| dmrfinder |
Man page
|
| dmrfinder.InfDiv |
Man page
|
| dmrfinder.list |
Man page
|
| dmrfinder.pDMP |
Man page
|
| ds |
Man page
|
| estimateBayesianDivergence |
Man page
|
| estimateBetaDist |
Man page
|
| estimateCutPoint |
Man page
|
| estimateDivergence |
Man page
|
| estimateECDF |
Man page
|
| estimateHellingerDiv |
Man page
|
| estimateJDiv |
Man page
|
| evaluateDIMPclass |
Man page
|
| filterByCoverage |
Man page
|
| filterGRange |
Man page
|
| fitGGammaDist |
Man page
|
| fitGammaDist |
Man page
|
| fitLogNormDist |
Man page
|
| getDIMPatGenes |
Man page
|
| getDIMPatGenes.GRanges |
Man page
|
| getDIMPatGenes.InfDiv |
Man page
|
| getDIMPatGenes.default |
Man page
|
| getDIMPatGenes.list |
Man page
|
| getDIMPatGenes.pDMP |
Man page
|
| getDMGs |
Man page
|
| getDMGs,pDMP,GRanges-method |
Man page
|
| getDMPatRegions |
Man page
|
| getDMPatRegions.GRanges |
Man page
|
| getDMPatRegions.InfDiv |
Man page
|
| getDMPatRegions.default |
Man page
|
| getDMPatRegions.list |
Man page
|
| getDMPatRegions.pDMP |
Man page
|
| getGEOSuppFiles |
Man page
|
| getGRangesStat |
Man page
|
| getGRangesStat,InfDiv-method |
Man page
|
| getGRangesStat,list-method |
Man page
|
| getGRangesStat,pDMP-method |
Man page
|
| getPotentialDIMP |
Man page
|
| ggamma |
Man page
|
| gibb_entropy |
Man page
|
| gibb_entropy,ProbDistrList-method |
Man page
|
| gibb_entropy,cdfMODEL-method |
Man page
|
| gibb_entropy,cdfMODELlist-method |
Man page
|
| gibb_entropy,missingORNULL-method |
Man page
|
| glmDataSet |
Man page
|
| gof |
Man page
|
| gofReport |
Man page
|
| hdiv |
Man page
|
| helmholtz_free_energy |
Man page
|
| helmholtz_free_energy,ProbDistrList-method |
Man page
|
| helmholtz_free_energy,cdfMODEL-method |
Man page
|
| helmholtz_free_energy,cdfMODELlist-method |
Man page
|
| helmholtz_free_energy,missingORNULL-method |
Man page
|
| lapply |
Man page
|
| lapply.default |
Man page
|
| lda_perf |
Man page
|
| logit_perf |
Man page
|
| machine_ent |
Man page
|
| machine_ent,ProbDistrList-method |
Man page
|
| machine_ent,cdfMODEL-method |
Man page
|
| machine_ent,cdfMODELlist-method |
Man page
|
| machine_ent,missing_OR_NULL-method |
Man page
|
| meth_levels |
Man page
|
| meth_levels,ANY,data.frame-method |
Man page
|
| meth_levels,GRanges,ANY-method |
Man page
|
| meth_levels,list,ANY-method |
Man page
|
| mlCutpoint |
Man page
|
| nonlinearFitDist |
Man page
|
| pcaLDA |
Man page
|
| pcaLda_perf |
Man page
|
| pcaLogisticR |
Man page
|
| pcaQDA |
Man page
|
| pcaQda_perf |
Man page
|
| pcalogit_perf |
Man page
|
| pggamma |
Man page
|
| pjob_split |
Man page
|
| poolFromGRlist |
Man page
|
| predict |
Man page
|
| predict,RandomForest,GRanges-method |
Man page
|
| predict,RandomForest,pDMP-method |
Man page
|
| predict,randomForestformula,GRanges-method |
Man page
|
| predict,randomForestformulaList,GRangesList-method |
Man page
|
| predict.LogisticR |
Man page
|
| predict.cdfMODEL |
Man page
|
| predict.cdfMODELlist |
Man page
|
| predict.ldaDMP |
Man page
|
| predict.pcaLDA |
Man page
|
| predict.pcaLogisticR |
Man page
|
| predict.pcaQDA |
Man page
|
| predict.pcaqda |
Man page
|
| predict.qdaDMP |
Man page
|
| predictDIMPclass |
Man page
|
| print.InfDiv |
Man page
|
| print.ProbDistrList |
Man page
|
| print.RangedGlmDataSet |
Man page
|
| print.glmDataSet |
Man page
|
| print.ldaDMP |
Man page
|
| print.mlDMP |
Man page
|
| print.pDMP |
Man page
|
| print.qdaDMP |
Man page
|
| print.testDMP |
Man page
|
| pweibull3P |
Man page
|
| qda_perf |
Man page
|
| qggamma |
Man page
|
| rcounts |
Man page
|
| readCounts2GRangesList |
Man page
|
| rggamma |
Man page
|
| selectDIMP |
Man page
|
| simpleCutPoint |
Man page
|
| slidingGRegions |
Man page
|
| sortBySeqnameAndEnd |
Man page
|
| sortBySeqnameAndStart |
Man page
|
| uniqueGRanges |
Man page
|
| uniqueGRfilterByCov |
Man page
|
| unlist |
Man page
|
| validateClass |
Man page
|
| validateClass.InfDiv |
Man page
|
| validateClass.default |
Man page
|
| validateClass.pDMP |
Man page
|
| weibull3P |
Man page
|
