API for gschofl/DR2S
Dual redundant reference sequencing
| Global functions | |
|---|---|
| %>% | Man page |
| .generateReferenceSequence | Man page |
| .getIdleCores | Man page |
| CLS.HapPart | Man page |
| DR2S | Man page |
| DR2S-package | Man page |
| DR2S_ | Man page |
| HTR.HapPart | Man page |
| HapPart | Man page |
| InitDR2S | Man page |
| K.HapPart | Man page |
| MergeEnv | Man page |
| MergeEnv_ | Man page |
| OC.HapPart | Man page |
| PRT.HapPart | Man page |
| PWM.HapPart | Man page |
| SCR.HapPart | Man page |
| SNP.HapPart | Man page |
| SNPmatrix | Man page |
| SQS.HapPart | Man page |
| bampath | Man page |
| cache | Man page |
| checkAlignmentFile | Man page |
| checkHomopolymerCount | Man page |
| clear | Man page |
| conseq | Man page |
| consmat | Man page |
| consmat<- | Man page |
| consname | Man page |
| conspath | Man page |
| createDR2SConf | Man page |
| createIgvConfigs | Man page |
| createIgvJsFiles | Man page |
| createPWM | Man page |
| disambiguateVariant | Man page |
| getSRPartitionScores | Man page |
| hammingDist | Man page |
| indelRate | Man page |
| indelRate<- | Man page |
| ins | Man page |
| ins<- | Man page |
| is.freq | Man page |
| mapFinal | Man page |
| mapInit | Man page |
| mapIter | Man page |
| mcoef.HapPart | Man page |
| meta | Man page |
| n | Man page |
| n<- | Man page |
| offsetBases | Man page |
| offsetBases<- | Man page |
| partitionLongreads | Man page |
| partitionReads | Man page |
| partitionShortreads | Man page |
| pileup | Man page |
| plotDiagnosticAlignment | Man page |
| plotPartitionHistogram | Man page |
| plotPartitionHistogramMulti | Man page |
| plotPartitionTree | Man page |
| plotPileupBasecallFrequency | Man page |
| plotPileupCoverage | Man page |
| plotRadarPartition | Man page |
| polish | Man page |
| polymorphicPositions | Man page |
| readDR2S | Man page |
| readDR2SConf | Man page |
| readMSA | Man page |
| readpath | Man page |
| reads | Man page |
| reads<- | Man page |
| readtype | Man page |
| reexports | Man page |
| refineAlignment | Man page |
| refname | Man page |
| refpath | Man page |
| report | Man page |
| reportCheckedConsensus | Man page |
| scoreHighestSR | Man page |
| stats | Man page |
| subSampleBam | Man page |
| tag | Man page |
| writeDR2SConf | Man page |
| writeMSA | Man page |
