API for gschofl/blastr
A wrapper for NCBI Blast
| Global functions | |
|---|---|
| $,BlastTable-method | Man page |
| .blast | Man page |
| BlastHeader-class | Man page |
| BlastParameters-class | Man page |
| BlastReport-class | Man page |
| BlastReportDB-class | Man page |
| BlastTable-class | Man page |
| Defline-class | Man page |
| DeflineSet-class | Man page |
| Deflines | Man page |
| Hit-class | Man page |
| HitList-class | Man page |
| Hsp-class | Man page |
| HspList-class | Man page |
| Query-class | Man page |
| QueryList-class | Man page |
| SQLiteDB-class | Man page |
| SysCall | Man page |
| [,BlastReport-method | Man page |
| [,BlastTable-method | Man page |
| [[,BlastReport-method | Man page |
| [[,BlastTable-method | Man page |
| blastReport | Man page |
| blastReportDB | Man page |
| blastReportDBConnect | Man page |
| blastTable | Man page |
| blast_db.sql | Man page |
| blastn | Man page |
| blastn_short | Man page |
| blastp | Man page |
| blastp_short | Man page |
| blastr | Man page |
| blastr-package | Man page |
| blastx | Man page |
| db_bulk_insert | Man page |
| db_connect | Man page |
| db_count | Man page |
| db_create | Man page |
| db_disconnect | Man page |
| db_info | Man page |
| db_is_current | Man page |
| db_list_fields | Man page |
| db_list_tables | Man page |
| db_query | Man page |
| dc_megablast | Man page |
| do_log | Man page |
| getAccession | Man page |
| getAlignLen | Man page |
| getBitscore | Man page |
| getDefline | Man page |
| getEvalue | Man page |
| getGaps | Man page |
| getGeneID | Man page |
| getHeader | Man page |
| getHeader,BlastReport-method | Man page |
| getHit | Man page |
| getHit,BlastReport-method | Man page |
| getHit,Query-method | Man page |
| getHit,QueryList-method | Man page |
| getHitCoverage | Man page |
| getHitDef | Man page |
| getHitFrame | Man page |
| getHitFrom | Man page |
| getHitID | Man page |
| getHitLen | Man page |
| getHitNum | Man page |
| getHitRange | Man page |
| getHitSeq | Man page |
| getHitTo | Man page |
| getHsp | Man page |
| getHspHitID | Man page |
| getHspID | Man page |
| getHspNum | Man page |
| getIdentity | Man page |
| getMatch | Man page |
| getMaxBitscore | Man page |
| getMaxPercIdentity | Man page |
| getParams | Man page |
| getParams,BlastReport-method | Man page |
| getPercGaps | Man page |
| getPercIdentity | Man page |
| getPercPositive | Man page |
| getPositive | Man page |
| getPrimaryDefline | Man page |
| getPrimaryHitDef | Man page |
| getQuery | Man page |
| getQuery,BlastReport-method | Man page |
| getQueryCoverage | Man page |
| getQueryDef | Man page |
| getQueryDef,BlastReport-method | Man page |
| getQueryDef,Query-method | Man page |
| getQueryDef,QueryList-method | Man page |
| getQueryFrame | Man page |
| getQueryFrom | Man page |
| getQueryID | Man page |
| getQueryID,BlastReport-method | Man page |
| getQueryID,Query-method | Man page |
| getQueryID,QueryList-method | Man page |
| getQueryLen | Man page |
| getQueryLen,BlastReport-method | Man page |
| getQueryLen,Query-method | Man page |
| getQueryLen,QueryList-method | Man page |
| getQueryNum | Man page |
| getQueryNum,BlastReport-method | Man page |
| getQueryNum,Query-method | Man page |
| getQueryNum,QueryList-method | Man page |
| getQueryRange | Man page |
| getQuerySeq | Man page |
| getQueryTo | Man page |
| getScore | Man page |
| getTotalBitscore | Man page |
| has_command | Man page |
| has_tables | Man page |
| is.na,BlastReport-method | Man page |
| linebreak | Man page |
| make_deflines | Man page |
| makeblasttdb | Man page |
| megablast | Man page |
| names,BlastTable-method | Man page |
| new_BlastHeader | Man page |
| new_BlastParameters | Man page |
| new_BlastReport | Man page |
| new_BlastReportDB | Man page |
| new_Hit | Man page |
| new_Hsp | Man page |
| new_Query | Man page |
| nhits | Man page |
| nhits,BlastReport-method | Man page |
| nhits,Query-method | Man page |
| nhits,QueryList-method | Man page |
| nhsps | Man page |
| nhsps,Query-method | Man page |
| nhsps,QueryList-method | Man page |
| qblast | Man page |
| rpsblast | Man page |
| show,BlastReport-method | Man page |
| sqliteDB | Man page |
| tblastn | Man page |
| tblastx | Man page |
| timestamp | Man page |
| update_blastdb | Man page |
