Files in gschofl/blastr

A wrapper for NCBI Blast

R/Hit-class.r R/Hsp-class.r R/Query-class.r R/all-generics.r R/blast-parser-db.r R/blast-parser.r R/blast-utils.r R/blast.r R/blastReport-class.r R/blastReportDB-class.r R/blastReportDB-getters.r R/blastTable-class.r R/blastr-package.r R/class-utils.r R/defline.r R/sqlite-db.r R/utils.r R/zzz.r README.md inst/tests/test-assertions.r man/BlastHeader-class.Rd man/BlastParameters-class.Rd man/BlastReport-class.Rd man/BlastReportDB-class.Rd man/BlastTable-class.Rd man/Defline-class.Rd man/DeflineSet-class.Rd man/Deflines.Rd man/Hit-class.Rd man/HitList-class.Rd man/Hsp-class.Rd man/HspList-class.Rd man/Query-class.Rd man/QueryList-class.Rd man/SQLiteDB-class.Rd man/SysCall.Rd man/blastReport.Rd man/blastReportDB.Rd man/blastTable.Rd man/blast_db.sql.Rd man/blastn.Rd man/blastp.Rd man/blastr.Rd man/blastx.Rd man/coordinates.Rd man/db_bulk_insert.Rd man/db_connect.Rd man/db_count.Rd man/db_create.Rd man/db_disconnect.Rd man/db_info.Rd man/db_is_current.Rd man/db_list_fields.Rd man/db_list_tables.Rd man/db_query.Rd man/do_log.Rd man/dot_blast.Rd man/getAccession.Rd man/getAlignLen.Rd man/getDefline.Rd man/getGaps.Rd man/getGeneID.Rd man/getHeader.Rd man/getHit.Rd man/getHitCoverage.Rd man/getHitDef.Rd man/getHitID.Rd man/getHitLen.Rd man/getHitNum.Rd man/getHsp.Rd man/getHspHitID.Rd man/getHspID.Rd man/getHspNum.Rd man/getIdentity.Rd man/getParams.Rd man/getPercGaps.Rd man/getPercIdentity.Rd man/getPercPositive.Rd man/getPositive.Rd man/getQuery.Rd man/getQueryCoverage.Rd man/getQueryDef.Rd man/getQueryID.Rd man/getQueryLen.Rd man/getQueryNum.Rd man/has_command.Rd man/has_tables.Rd man/linebreak.Rd man/make_deflines.Rd man/makeblasttdb.Rd man/nhits.Rd man/nhsps.Rd man/qblast.Rd man/rpsblast.Rd man/scores.Rd man/sequence.Rd man/tblastn.Rd man/tblastx.Rd man/timestamp.Rd man/update_blastdb.Rd tests/test-all.R tests/testthat/test-01-assertions.R tests/testthat/test-02-BlastReport.R tests/testthat/test-03-BlastReportDB.R