Man pages for gustaveroussy/EaCoN
EaCoN : Easy Copy Number !

EaCoN.AnnotateAnnotation of segmented regions and generation of an HTML QC...
EaCoN.Annotate.ffAnnotation of segmented regions and generation of an HTML QC...
EaCoN.Annotate.ff.BatchRuns EaCoN.Annotate.ff in batch mode with multithreading
EaCoN.ASCNAllele-Specific Copy Number estimation using ASCAT.
EaCoN.ASCN.ffAllele-Specific Copy Number estimation using ASCAT, from a...
EaCoN.ASCN.ff.BatchAllele-Specific Copy Number estimation using ASCAT, from a...
EaCoN.BedCheckPerforms checks un cleanups on a WES capture bed file
EaCoN.BedGC.chrCompute GC-content of genomic regions defined by a BED file...
EaCoN.BedGC.fastaCompute GC-content of genomic regions defined by a BED file...
EaCoN.BINpack.MakerGenerates a "BINpack" containing binned data and GC tracks...
EaCoN.CS.ProcessNormalize CytoScanHD_Array arrays using Affymetrix Power...
EaCoN.CS.Process.BatchRun EaCoN.CS.Process() in batch mode with multithreading
EaCoN.OS.ProcessNormalize OncoScan / OncoScan_CNV arrays using Affymetrix...
EaCoN.OS.Process.BatchRuns EaCoN.OS.Process in batch mode with multithreading
EaCoN.SegmentL2R and BAF joint segmentation using ASCAT.
EaCoN.Segment.ffL2R and BAF joint segmentation using ASCAT, from a RDS file.
EaCoN.Segment.ff.BatchL2R and BAF joint segmentation using ASCAT, from a RDS file...
EaCoN.set.bitmapTypeChanges the environment variable bitmapType
EaCoN.SNP6.ProcessNormalize GenomeWideSNP_6 arrays using Affymetrix Power Tools...
EaCoN.SNP6.Process.BatchRun EaCoN.SNP6.Process() in batch mode with multithreading
EaCoN.WES.BinComputes the read depth of a pair of BAM files and bins it.
EaCoN.WES.Bin.BatchRun EaCoN.WES.Bin() in batch mode with multithreading
EaCoN.WES.NormalizeNormalization of binned WES data.
EaCoN.WES.Normalize.ffNormalization of binned WES data from a RDS file.
EaCoN.WES.Normalize.ff.BatchNormalization of binned WES data from a RDS file in batch...
EaCoN.WES.ProcessPerforms the binning, then the normalization of WES read...
GC.dataDataset containing GC-content data
gen.dfHuman gene symbols and chromosomal positions (refGene)
targetlistA restricted list of human gene symbols
gustaveroussy/EaCoN documentation built on March 24, 2018, 7:03 a.m.