OS.Process.Batch: Runs OS.Process in batch mode with multithreading

In gustaveroussy/EaCoN: EaCoN : Easy Copy Number !

Description

This is just a wrapper to OS.Process() with multithreading.

Usage

  OS.Process.Batch(pairs.file = NULL, nthread = 1, cluster.type = "PSOCK", ...)

Arguments

pairs.file	A tab-separated file giving the file names of the pair(s) of OncoScan CEL files and sample name.
nthread	Number of thread(s) for multithreading (see Details).
cluster.type	Type of multithreading cluster (see ?parallel::makeCluster()).
...	Any other parameter for OS.Process()) except ATChannelCel, GCChannelCel and samplename.

Details

pairs.file is a tab-separated text file containing 3 columns (header and specified column names are mandatory) :

• ATChannelCel : Name (and path) of the A-channel CEL file(s)

• GCChannelCel : Name (and path) of the C-channel CEL file(s)

• SampleName : The output sample name(s)

Author(s)

Bastien Job

gustaveroussy/EaCoN documentation built on Oct. 20, 2021, 2:41 a.m.