Segment.ff: L2R and BAF joint segmentation, from a RDS file.

In gustaveroussy/EaCoN: EaCoN : Easy Copy Number !

Description

This function is just a wrapper to any of the segmentation functions (Segment.ASCAT(), Segment.FACETS()), starting from a RDS file rather than a data object.

Usage

  Segment.ff(RDS.file = NULL, segmenter = "ASCAT", ...)

Arguments

RDS.file	A RDS file generated with a normalization function : WES.Normalize() (for WES data), CS.Process() (for Affymetrix CytoScan data), OS.Process() (for Affymetrix OncoScan data), or SNP6.Process() (for Affymetrix GenomeWideSNP_6 data).
segmenter	The (case sensitive!) name of the segmenter ("ASCAT" or "FACETS")
...	Any parameter to the segmentation function refered by the segmenter name, except data.

Author(s)

Bastien Job

gustaveroussy/EaCoN documentation built on Oct. 20, 2021, 2:41 a.m.