ASCN.FACETS: Allele-Specific Copy Number estimation using FACETS

Description Usage Arguments Value Author(s)

View source: R/EaCoN_functions.R

Description

This function performs the estimation of allele-specific copy number using FACETS.

Usage

1
  ASCN.FACETS(data = NULL, out.dir = getwd(), force = FALSE, ...)

Arguments

data

Data object contained in a RDS file generated with Segment.FACETS() (or corresponding wrappers Segment.ff() and Segment.ff.Batch(), using the "FACETS" segmenter.

out.dir

Output directory.

force

If some result files already exist, delete them before runing.

...

Any additional parameter to give to facets::emcncf().

Value

Several RDS objects, PNG plots, CBS files and data tables.

Author(s)

Bastien Job


gustaveroussy/EaCoN documentation built on Oct. 20, 2021, 2:41 a.m.