ASCN.FACETS: Allele-Specific Copy Number estimation using FACETS

In gustaveroussy/EaCoN: EaCoN : Easy Copy Number !

Description

This function performs the estimation of allele-specific copy number using FACETS.

Usage

  ASCN.FACETS(data = NULL, out.dir = getwd(), force = FALSE, ...)

Arguments

data	Data object contained in a RDS file generated with Segment.FACETS() (or corresponding wrappers Segment.ff() and Segment.ff.Batch(), using the "FACETS" segmenter.
out.dir	Output directory.
force	If some result files already exist, delete them before runing.
...	Any additional parameter to give to facets::emcncf().

Value

Several RDS objects, PNG plots, CBS files and data tables.

Author(s)

Bastien Job

gustaveroussy/EaCoN documentation built on Oct. 20, 2021, 2:41 a.m.