ASCN.ff.Batch: Allele-Specific Copy Number estimation, from RDS files in...

In gustaveroussy/EaCoN: EaCoN : Easy Copy Number !

Description

This function is just a wrapper to ASCN.ff() with multithreading).

Usage

  ASCN.ff.Batch(RDS.files = list.files(path = getwd(),
  pattern = "\\.SEG\\..*\\.RDS$", full.names = TRUE, recursive = TRUE,
  ignore.case = TRUE, include.dirs = FALSE), nthread = 1,
  cluster.type = "PSOCK", ...)

Arguments

RDS.files	A list of RDS files generated with one of the segmentation functions (Segment.ASCAT(), Segment.FACETS(), Segment.SEQUENZA()), or their corresponding ".ff" or ".ff.Batch" wrappers.
nthread	Number of threads.
cluster.type	Type of multithreading cluster (see ?parallel::makeCluster()).
...	Any parameter to the copy number estimation function, except data.

Author(s)

Bastien Job

gustaveroussy/EaCoN documentation built on Oct. 20, 2021, 2:41 a.m.