WES.Normalize.ff.Batch: Normalization of binned WES data from a RDS file in batch...

In gustaveroussy/EaCoN: EaCoN : Easy Copy Number !

Description

This function is just a wrapper to WES.Normalize.ff() with multithreading).

Usage

  WES.Normalize.ff.Batch(BIN.RDS.files = list.files(path = getwd(),
  pattern = "_binned.RDS$", all.files = FALSE, full.names = TRUE, recursive = TRUE,
  ignore.case = FALSE, include.dirs = FALSE), nthread = 1, cluster.type = "PSOCK", ...)

Arguments

BIN.RDS.files	A list of RDS files generated by WES.Bin().
nthread	Number of threads.
cluster.type	Type of multithreading cluster (see ?parallel::makeCluster()).
...	Any parameter for the function WES.Normalize(), except data.

Value

For each RDS file in input, a RDS file that can be used with Segment.ASCAT.ff().

Author(s)

Bastien Job

gustaveroussy/EaCoN documentation built on Oct. 20, 2021, 2:41 a.m.