Annotate.ff.Batch: Runs Annotate.ff in batch mode with multithreading

In gustaveroussy/EaCoN: EaCoN : Easy Copy Number !

Description

This is just a wrapper to Annotate.ff() with multithreading.

Usage

  Annotate.ff.Batch(RDS.files = list.files(path = getwd(),
  pattern = "\\\\.SEG\\\\..*\\\\.RDS$", full.names = TRUE, recursive = TRUE,
  ignore.case = TRUE, include.dirs = FALSE), nthread = 1,
  cluster.type = "PSOCK", ...)

Arguments

RDS.files	A list of RDS files generated with Segment.ASCAT().
nthread	Number of thread(s) for multithreading (see Details).
cluster.type	Type of multithreading cluster (see ?parallel::makeCluster()).
...	Any other parameter for Annotate() except data.

Author(s)

Bastien Job

gustaveroussy/EaCoN documentation built on Oct. 20, 2021, 2:41 a.m.