SNP6.Process.Batch: Run SNP6.Process() in batch mode with multithreading

In gustaveroussy/EaCoN: EaCoN : Easy Copy Number !

Description

This is just a wrapper to SNP.Process() with multithreading.

Usage

  SNP6.Process.Batch(CEL.list.file = NULL, nthread = 1, cluster.type = "PSOCK", ...)

Arguments

CEL.list.file	A tab-separated file giving the file names of the CEL files and corresponding sample name (see Details section).
nthread	Number of threads for multithreading (see Details).
cluster.type	Type of multithreading cluster (see ?parallel::makeCluster()).
...	Any parameter for the function SNP.Process(), except CEL, samplename and return.data.

Details

CEL.list.file is a tab-separated text file containing 2 columns (header and specified column names are mandatory) :

• cel_files : Name (and path) of the CEL file(s)

• SampleName : The output sample name(s)

Author(s)

Bastien Job

gustaveroussy/EaCoN documentation built on Oct. 20, 2021, 2:41 a.m.