colMeanZscores: Mean Z-score Gene Signature

In insightsengineering/hermes: Preprocessing, analyzing, and reporting of RNA-seq data

Mean Z-score Gene Signature

Description

This helper function returns the Z-score from an assay stored as a matrix.

Usage

colMeanZscores(x)

Arguments

x	(matrix) containing numeric data with genes in rows and samples in columns, no missing values are allowed.

Value

A numeric vector containing the mean Z-score values for each column in x.

Examples

object <- hermes_data %>%
  add_quality_flags() %>%
  filter() %>%
  normalize() %>%
  assay("counts")

colMeanZscores(object)

insightsengineering/hermes documentation built on Jan. 25, 2025, 6:21 a.m.