h_get_granges_by_id | R Documentation |
GRanges
This function extracts the chromosome number, the start position and the end position of transcripts
in given data.frame
with coordinates as returned by biomaRt::getBM()
and converts
them to a GRanges
object.
h_get_granges_by_id(coords, id)
coords |
( |
id |
( |
GRange
objects for the respective single gene ID.
if (interactive()) { mart <- biomaRt::useMart("ensembl", dataset = "hsapiens_gene_ensembl") attrs <- c( "ensembl_gene_id", "ensembl_exon_id", "chromosome_name", "exon_chrom_start", "exon_chrom_end" ) coords <- biomaRt::getBM( filters = "entrezgene_id", attributes = attrs, values = c("11185", "10677"), mart = mart ) h_get_granges_by_id(coords, "ENSG00000135407") }
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.