View source: R/draw_scatterplot.R
draw_scatterplot | R Documentation |
This produces a scatterplot of two genes or gene signatures.
draw_scatterplot( object, assay_name, x_spec, y_spec, color_var = NULL, facet_var = NULL, smooth_method = c("lm", "loess", "none") )
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assay_name |
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x_spec |
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y_spec |
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The ggplot
scatterplot.
object <- hermes_data g <- genes(object) draw_scatterplot( object, assay_name = "counts", facet_var = NULL, x_spec = gene_spec(c(A = g[1])), y_spec = gene_spec(g[2]), color = "RACE" ) object2 <- object %>% add_quality_flags() %>% filter() %>% normalize() g2 <- genes(object2) draw_scatterplot( object2, assay_name = "tpm", facet_var = "SEX", x_spec = gene_spec(g2[1:10], colMeans, "Mean"), y_spec = gene_spec(g2[11:20], colMedians, "Median"), smooth_method = "loess" )
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