connect_biomart | R Documentation |
connect_biomart()
creates a connection object of class ConnectionBiomart
which contains
the biomaRt
object of class biomaRt::Mart
and the prefix of the object
which is used downstream for the query.
connect_biomart(prefix = c("ENSG", "GeneID"), version = NULL)
prefix |
( |
version |
( |
This connects to the Ensembl data base of BioMart for human genes. A specific version can be optionally chosen to ensure reproducibility of results once a new release is available, as accessed data might then change.
ConnectionBiomart
object.
if (interactive()) { connection <- connect_biomart("ENSG") }
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