h_ensembl_to_entrez_ids: Translation of 'Ensembl' to 'Entrez' Gene IDs

In insightsengineering/hermes: Preprocessing, analyzing, and reporting of RNA-seq data

Translation of Ensembl to Entrez Gene IDs

Description

This helper function queries BioMart to translate Ensembl to Entrez Gene IDs.

Usage

h_ensembl_to_entrez_ids(gene_ids, mart)

Arguments

gene_ids	(character) Ensembl gene IDs.
mart	(Mart) given biomaRt::Mart object.

Value

Character vector of Entrez gene IDs.

Examples

if (interactive()) {
  mart <- biomaRt::useMart("ensembl", dataset = "hsapiens_gene_ensembl")
  h_ensembl_to_entrez_ids(c("ENSG00000135407", "ENSG00000241644"), mart)
}

insightsengineering/hermes documentation built on Dec. 15, 2024, 8:07 a.m.