irycisBioinfo/PATO: Pangenome Analysis Toolkit
PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species. It allows to analyze the core-genome, accessory genome and whole genome, the population structure, and the horizontal gene transfer dynamics. PATO uses, as core software MASH, MMSeq2, Minimap2 and R.
Getting started
Browse package contents
Package details |
|
|---|---|
| Author | Miguel Diez Fernandez de Bobadilla Alba Talavera RodrÃguez Lucia Chacon Vargas Fernando Baquero Teresa M. Coque Val F. Lanza <valfernandez.vf@gmail.com> |
| Maintainer | Val F. Lanza <valfernandez.vf@gmail.com> |
| License | CC0 |
| Version | 1.0.6 |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
|
