API for irycisBioinfo/PATO
Pangenome Analysis Toolkit

Global functions
accnet	Man page Source code
accnet_enrichment_analysis	Man page Source code
accnet_with_padj	Man page Source code
annotate	Man page Source code
as.data.frame.nr_list	Man page Source code
classifier	Man page Source code
cluster_accnet	Man page Source code
cluster_files_from_distance	Man page Source code
cluster_knnn	Man page Source code
cluster_mash	Man page Source code
clustering	Man page Source code
coincidents	Man page Source code
core_genome	Man page Source code
core_plots	Man page Source code
core_snp_genome	Man page Source code
core_snps_matrix	Man page Source code
dn_ds	Man page Source code
eggnogmapper	Man page Source code
export_accnet_aln	Man page Source code
export_core_to_fasta	Man page Source code
export_to_gephi	Man page Source code
extract_non_redundant	Man page Source code
heatmap_of_annotation	Man page Source code
install_db	Man page Source code
knnn	Man page Source code
load_gff_list	Man page Source code
mash	Man page Source code
mmseqs	Man page Source code
network_of_annotation	Man page Source code
non_redundant	Man page Source code
non_redundant_hier	Man page Source code
non_redundant_pangenomes	Man page Source code
outliers	Man page Source code
pangenomes_from_files	Man page Source code
pangenomes_from_files_mmseqs	Man page Source code
pangenomes_from_mmseqs	Man page Source code
pangenomes_mmseqs	Man page Source code
plasmidome	Man page Source code
plot_knnn_network	Man page Source code
remove_outliers	Man page Source code
screening	Man page Source code
sharedness	Man page Source code
similarity_network	Man page Source code
similarity_tree	Man page Source code
singles	Man page Source code
snps_map	Man page Source code
snps_pairwaise	Man page Source code
twins	Man page Source code
umap_plot	Man page Source code