API for irycisBioinfo/PATO
Pangenome Analysis Toolkit

Global functions
accnet Man page Source code
accnet_enrichment_analysis Man page Source code
accnet_with_padj Man page Source code
annotate Man page Source code
as.data.frame.nr_list Man page Source code
classifier Man page Source code
cluster_accnet Man page Source code
cluster_files_from_distance Man page Source code
cluster_knnn Man page Source code
cluster_mash Man page Source code
clustering Man page Source code
coincidents Man page Source code
core_genome Man page Source code
core_plots Man page Source code
core_snp_genome Man page Source code
core_snps_matrix Man page Source code
dn_ds Man page Source code
eggnogmapper Man page Source code
export_accnet_aln Man page Source code
export_core_to_fasta Man page Source code
export_to_gephi Man page Source code
extract_non_redundant Man page Source code
heatmap_of_annotation Man page Source code
install_db Man page Source code
knnn Man page Source code
load_gff_list Man page Source code
mash Man page Source code
mmseqs Man page Source code
network_of_annotation Man page Source code
non_redundant Man page Source code
non_redundant_hier Man page Source code
non_redundant_pangenomes Man page Source code
outliers Man page Source code
pangenomes_from_files Man page Source code
pangenomes_from_files_mmseqs Man page Source code
pangenomes_from_mmseqs Man page Source code
pangenomes_mmseqs Man page Source code
plasmidome Man page Source code
plot_knnn_network Man page Source code
remove_outliers Man page Source code
screening Man page Source code
sharedness Man page Source code
similarity_network Man page Source code
similarity_tree Man page Source code
singles Man page Source code
snps_map Man page Source code
snps_pairwaise Man page Source code
twins Man page Source code
umap_plot Man page Source code
irycisBioinfo/PATO documentation built on Oct. 19, 2023, 3:07 p.m.