cluster_files_from_distance: Internal Function of the workflow pangenomes_from_file
In irycisBioinfo/PATO: Pangenome Analysis Toolkit
View source: R/cluster_files_from_distance.R
cluster_files_from_distance R Documentation
Internal Function of the workflow pangenomes_from_file
Description
Internal Function of the workflow pangenomes_from_file
Usage
cluster_files_from_distance(files, file_type, distance, n_cores, folder)
Arguments
files
data.frame with the path of the selected genomes
file_type
Type of fasta files 'prot' or 'nucl'
distance
threshold distances of the clustering proccess
n_cores
Num of cores to use with MASH
folder
Value
A data frame with the membership of each genome.
irycisBioinfo/PATO documentation built on Oct. 19, 2023, 3:07 p.m.
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View source: R/cluster_files_from_distance.R
| cluster_files_from_distance | R Documentation |
Internal Function of the workflow pangenomes_from_file
Description
Internal Function of the workflow pangenomes_from_file
Usage
cluster_files_from_distance(files, file_type, distance, n_cores, folder)
Arguments
files |
data.frame with the path of the selected genomes |
file_type |
Type of fasta files 'prot' or 'nucl' |
distance |
threshold distances of the clustering proccess |
n_cores |
Num of cores to use with MASH |
folder |
Value
A data frame with the membership of each genome.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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