load_gff_list: Load GFF3 file list
In irycisBioinfo/PATO: Pangenome Analysis Toolkit
View source: R/load_gff_list.R
load_gff_list R Documentation
Load GFF3 file list
Description
This function load and process a list of GFF3 files. The function extract CDS in nucleotide and
in aminoacids. It creates four folder with the GFF anotation, the FNA whole-genome sequence,
the FFN for fasta features nucleotide and the FAA with the proteome function.
Usage
load_gff_list(input_files, n_cores)
Arguments
file
Details
Load GFF3 files is slower than load multiple-fasta files (nucleotide or aminoacids) so for large
datasets we recommend to load fasta files instead of GFF3.
Value
The function returns a gff_list object the can be used as input for other functions (mmseqs, mash)
irycisBioinfo/PATO documentation built on Oct. 19, 2023, 3:07 p.m.
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View source: R/load_gff_list.R
| load_gff_list | R Documentation |
Load GFF3 file list
Description
This function load and process a list of GFF3 files. The function extract CDS in nucleotide and in aminoacids. It creates four folder with the GFF anotation, the FNA whole-genome sequence, the FFN for fasta features nucleotide and the FAA with the proteome function.
Usage
load_gff_list(input_files, n_cores)
Arguments
file |
Details
Load GFF3 files is slower than load multiple-fasta files (nucleotide or aminoacids) so for large datasets we recommend to load fasta files instead of GFF3.
Value
The function returns a gff_list object the can be used as input for other functions (mmseqs, mash)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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