similarity_network: Similarity Network
In irycisBioinfo/PATO: Pangenome Analysis Toolkit
View source: R/similarity_network.R
similarity_network R Documentation
Similarity Network
Description
The function creates a similarity network connecting genomes
with 'distances' lower than the especified threshold.
Usage
similarity_network(data, threshold)
Arguments
data
An object of class accnet or mash
threshold
Maximun distance to include in the network.
Details
The distance must to be addecuated for the type of data.
MASH values rangin between 0-0.05 intra-specie mean while accnet distances
could be higher.
Value
An igraph object.
irycisBioinfo/PATO documentation built on Oct. 19, 2023, 3:07 p.m.
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View source: R/similarity_network.R
| similarity_network | R Documentation |
Similarity Network
Description
The function creates a similarity network connecting genomes with 'distances' lower than the especified threshold.
Usage
similarity_network(data, threshold)
Arguments
data |
An object of class accnet or mash |
threshold |
Maximun distance to include in the network. |
Details
The distance must to be addecuated for the type of data. MASH values rangin between 0-0.05 intra-specie mean while accnet distances could be higher.
Value
An igraph object.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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