core_snps_matrix: Core SNPs matrix
In irycisBioinfo/PATO: Pangenome Analysis Toolkit
View source: R/core_snps_matrix.R
core_snps_matrix R Documentation
Core SNPs matrix
Description
This function calculates the number of SNPs among samples in core genome.
Usage
core_snps_matrix(data, norm = T, rm.gaps = F)
Arguments
data
A core_genome object.
norm
Number of SNPs normalize by the length of the alingment?
rm.gaps
remove gaps from the alignment?
Value
A square matrix
irycisBioinfo/PATO documentation built on Oct. 19, 2023, 3:07 p.m.
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View source: R/core_snps_matrix.R
| core_snps_matrix | R Documentation |
Core SNPs matrix
Description
This function calculates the number of SNPs among samples in core genome.
Usage
core_snps_matrix(data, norm = T, rm.gaps = F)
Arguments
data |
A core_genome object. |
norm |
Number of SNPs normalize by the length of the alingment? |
rm.gaps |
remove gaps from the alignment? |
Value
A square matrix
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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