Files in isglobal-brge/dsOmics
DataSHIELD server site Omic functions
.Rbuildignore
.github/workflows/docker-build.yml
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/BAM2VCF.R
R/DESeq2DS.R
R/EGAhtsgetResourceClient.R
R/EGAhtsgetResourceResolver.R
R/GA4GHResourceClient.R
R/GA4GHResourceResolver.R
R/GDSFileResourceClient.R
R/GDSFileResourceResolver.R
R/GWASDS.R
R/GenotypeDataDS.R
R/Opal2FileResourceGetter.R
R/PCADS.R
R/PCASNPSDS.R
R/PRSDS.R
R/RNAseqPreprocDS.R
R/addPhenoDataDS.R
R/alleleFrequencyDS.R
R/cellCountsDS.R
R/computeN.R
R/createRSEDS.R
R/edgeRDS.R
R/exactHWEDS.R
R/extractPhenoFromGDSDS.R
R/fastAlleleFrequencyDS.R
R/fastGWASDS.R
R/featureDataDS.R
R/featureNamesDS.R
R/fvarLabelsDS.R
R/gdsSubset.R
R/genoDimensionsDS.R
R/getChromosomeNamesDS.R
R/getSNPSbyGenDS.R
R/getVariable.R
R/laplaceNoise.R
R/limmaDS.R
R/limmaDS2.R
R/lmFeatureDS.R
R/make_valid_namesDS.R
R/methylation_array_convertDS.R
R/nFeaturesDS.R
R/nSamplesDS.R
R/one_hot_encoding.R
R/pDataDS.R
R/plinkDS.R
R/plotPCADS.R
R/plotPCASNPSDS.R
R/removeOutliersDS.R
R/selFeatureDS.R
R/selSNPDS.R
R/snptestDS.R
R/subsetExpressionSet2DS.R
R/subsetExpressionSetDS.R
R/subsetGenoDS.R
R/varLabelsDS.R
R/zzz.R
README.md
data/ethnic_snps.rda
docker/Dockerfile_dsOmics
docker/Makefile
docs/404.html
docs/LICENSE-text.html
docs/articles/geno_exploration.html
docs/articles/index.html
docs/authors.html
docs/bootstrap-toc.css
docs/bootstrap-toc.js
docs/docsearch.css
docs/docsearch.js
docs/index.html
docs/link.svg
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/BAM2VCF.html
docs/reference/DESeq2DS.html
docs/reference/EGAhtsgetResourceClient.html
docs/reference/EGAhtsgetResourceResolver.html
docs/reference/GA4GHResourceClient.html
docs/reference/GA4GHResourceResolver.html
docs/reference/GDSFileResourceClient.html
docs/reference/GDSFileResourceResolver.html
docs/reference/GWASDS.html
docs/reference/GenotypeDataDS.html
docs/reference/Laplace_noise_generator.html
docs/reference/Opal2FileResourceGetter.html
docs/reference/PCADS.html
docs/reference/PCASNPSDS.html
docs/reference/PRSDS.html
docs/reference/PRSDS_aux.html
docs/reference/RNAseqPreprocDS.html
docs/reference/Rplot001.png
docs/reference/addPhenoDataDS.html
docs/reference/alleleFrequencyDS.html
docs/reference/cellCountsDS.html
docs/reference/createRSEDS.html
docs/reference/dlaplace.html
docs/reference/dot-fittedValues_exponential.html
docs/reference/dot-fittedValues_linear.html
docs/reference/dot-retrievePGS.html
docs/reference/edgeRDS.html
docs/reference/exactHWEDS.html
docs/reference/extractPhenoFromGDSDS.html
docs/reference/fastAlleleFrequencyDS.html
docs/reference/fastGWAS_ColSums.html
docs/reference/fastGWAS_PHENO_removeNAindiv.html
docs/reference/fastGWAS_S.html
docs/reference/fastGWAS_S_means.html
docs/reference/fastGWAS_getFitted.values.html
docs/reference/fastGWAS_getResiduals.html
docs/reference/featureDataDS.html
docs/reference/featureNamesDS.html
docs/reference/fvarLabelsDS.html
docs/reference/gdsSubset2.html
docs/reference/genoDimensionsDS.html
docs/reference/geno_pca_pooled_addPC2GenoDS.html
docs/reference/geno_pca_pooled_addPCDS.html
docs/reference/getChromosomeNamesDS.html
docs/reference/getSNPSbyGenDS.html
docs/reference/getVariable.html
docs/reference/index.html
docs/reference/limmaDS.html
docs/reference/make_valid_namesDS.html
docs/reference/nFeaturesDS.html
docs/reference/nSamplesDS.html
docs/reference/plinkDS.html
docs/reference/plotPCADS.html
docs/reference/plotPCASNPSDS.html
docs/reference/removeOutliersDS.html
docs/reference/rlaplace.html
docs/reference/selFeatureDS.html
docs/reference/selSNPDS.html
docs/reference/snptestDS.html
docs/reference/subsetExpressionSetDS.html
docs/reference/subsetGenoDS.html
docs/reference/svdPartial.html
docs/reference/varLabelsDS.html
docs/sitemap.xml
inst/resources/resource.js
man/BAM2VCF.Rd
man/DESeq2DS.Rd
man/EGAhtsgetResourceClient.Rd
man/EGAhtsgetResourceResolver.Rd
man/GA4GHResourceClient.Rd
man/GA4GHResourceResolver.Rd
man/GDSFileResourceClient.Rd
man/GDSFileResourceResolver.Rd
man/GWASDS.Rd
man/GenotypeDataDS.Rd
man/Laplace_noise_generator.Rd
man/Opal2FileResourceGetter.Rd
man/PCADS.Rd
man/PCASNPSDS.Rd
man/PRSDS.Rd
man/PRSDS_aux.Rd
man/RNAseqPreprocDS.Rd
man/addPhenoDataDS.Rd
man/alleleFrequencyDS.Rd
man/cellCountsDS.Rd
man/computeN.Rd
man/createRSEDS.Rd
man/dlaplace.Rd
man/dot-fittedValues_exponential.Rd
man/dot-fittedValues_linear.Rd
man/dot-one_hot_encoding.Rd
man/dot-retrievePGS.Rd
man/edgeRDS.Rd
man/exactHWEDS.Rd
man/extractPhenoFromGDSDS.Rd
man/fastAlleleFrequencyDS.Rd
man/fastGWAS_ColSums.Rd
man/fastGWAS_PHENO_removeNAindiv.Rd
man/fastGWAS_S.Rd
man/fastGWAS_S_means.Rd
man/fastGWAS_getFitted.values.Rd
man/fastGWAS_getResiduals.Rd
man/featureDataDS.Rd
man/featureNamesDS.Rd
man/fvarLabelsDS.Rd
man/gdsSubset2.Rd
man/genoDimensionsDS.Rd
man/geno_pca_pooled_addPC2GenoDS.Rd
man/geno_pca_pooled_addPCDS.Rd
man/getChromosomeNamesDS.Rd
man/getSNPSbyGenDS.Rd
man/getVariable.Rd
man/limmaDS.Rd
man/limmaDS2.Rd
man/make_valid_namesDS.Rd
man/methylation_array_convertDS.Rd
man/nFeaturesDS.Rd
man/nSamplesDS.Rd
man/pDataDS.Rd
man/plinkDS.Rd
man/plotPCADS.Rd
man/plotPCASNPSDS.Rd
man/removeOutliersDS.Rd
man/rlaplace.Rd
man/selFeatureDS.Rd
man/selSNPDS.Rd
man/snptestDS.Rd
man/subsetExpressionSet2DS.Rd
man/subsetExpressionSetDS.Rd
man/subsetGenoDS.Rd
man/svdPartial.Rd
man/varLabelsDS.Rd
vignettes/geno_exploration.Rmd
vignettes/geno_exploration.nb.html
