README.md

In jdreyf/ezlimma: Streamlines and extends limma package

ezlimma

R package that streamlines & extends the popular R/Bioconductor package limma.

Install

On Windows, you should have Rtools.

Install ezlimma from GitHub using remotes within R. You must install remotes, e.g. with install.packages("remotes"), if you haven't before. ezlimma depends on limma so you must also install this using instruction below if you haven't before.

#if haven't already installed limma
install.packages("BiocManager") #if haven't already installed BiocManager
library(BiocManager)
BiocManager::install("limma")

library(remotes)
remotes::install_github(repo="jdreyf/ezlimma", build_opts = c("--no-resave-data", "--no-manual"), build_vignettes = TRUE)

Usage

The vignette presents a tutorial. To see the vignette:

library(limma)
library(ezlimma)
library(rmarkdown)
browseVignettes(package="ezlimma")

and click on HTML.

Code of Conduct

This project is released with a Contributor Code of Conduct. By contributing to this project, you agree to abide by its terms.

jdreyf/ezlimma documentation built on April 28, 2024, 1:10 p.m.