g_index: Create object with indices of genes per gene set

In jdreyf/ezlimma: Streamlines and extends limma package

Create object with indices of genes per gene set

Description

Create object with indices of genes per gene set.

Usage

g_index(G, object, min.nfeats, max.nfeats)

Arguments

G	Gene set list as returned from read_gmt.
object	Matrix-like data object containing log-ratios or log-expression values, with rows corresponding to features (e.g. genes) and columns to samples. Must have row names that are non-duplicated and non-empty.
min.nfeats	Minimum number of features (e.g. genes) needed in a gene set for testing.
max.nfeats	Maximum number of features (e.g. genes) needed in a gene set for testing.

Value

Named list of indices of acceptable gene sets in G.

jdreyf/ezlimma documentation built on March 3, 2024, 4:23 a.m.